Modules

Funannotate2 consists of several modules that handle different aspects of the annotation process.

funannotate2.clean

The clean module provides functions for cleaning and preparing genome assemblies for annotation.

The predict module provides functions for predicting genes in genome assemblies.

The annotate module provides functions for functionally annotating predicted genes.

The search module provides functions for searching sequences against various databases.

The utilities module provides utility functions used by other modules.

The log module provides logging functions used by other modules.